Title: Visualisation of influenza A protein segments in distance invariant self-organising map
Authors: Wei-Chen Cheng; Cheng-Yuan Liou
Addresses: Department of Computer Science and Information Engineering, National Taiwan University, No. 1, Sec. 4, Roosevelt Rd., Taipei 10617, Taiwan. ' Department of Computer Science and Information Engineering, National Taiwan University, No. 1, Sec. 4, Roosevelt Rd., Taipei 10617, Taiwan
Abstract: Due to the lateral gene transfer, the phylogenetic tree could be inadequate for representing the evolution of virus. This paper employs the distance invariant manifold (Cheng and Liou, 2009) to display the collection of influenza A in a cubic space. This space provides a global view of the evolution of the whole family vividly.
Keywords: information visualisation; tree of life; self-organising maps; distance invariant manifold; influenza A; H1N1; avian influenza; bird flu; H5N1; phylogenetic tree; lateral gene transfer; mutation.
DOI: 10.1504/IJIIDS.2012.045116
International Journal of Intelligent Information and Database Systems, 2012 Vol.6 No.1, pp.45 - 60
Received: 14 Jul 2010
Accepted: 06 Dec 2010
Published online: 16 Aug 2014 *