Prediction and simulation on DNA strand displacement for the analysis of DNA nanotechnology
by C.P. Chandran
International Journal of Nano and Biomaterials (IJNBM), Vol. 6, No. 3/4, 2016

Abstract: The objective of this work is to study the simulation techniques to simulate the time interval between displacements of deoxyribonucleic acid (DNA) strands efficiently and predict the simulation. In this work, two algorithms are proposed. The first proposed algorithm, modified Viterbi algorithm (MVA), is used to find sequence of hidden states and predict the sequence for the hidden DNA structure. Another proposed algorithm, modified Gillespie algorithm (MGA), integrates the stochastic processes such as Gillespie algorithm (GA) and next reaction method (NRM), is used to simulate the displacement of strands efficiently. The dataset used in this work is Droshipilla melanogaster. The output is the simulation of time interval between the strands. When the time interval between the strands increases the number of molecules also increases according to the time. This work resulted the simulated time interval between the displacements of strands and obtained the efficient simulation of strand displacement for the prediction of molecular structure and interaction between molecules.

Online publication date: Fri, 25-Aug-2017

The full text of this article is only available to individual subscribers or to users at subscribing institutions.

 
Existing subscribers:
Go to Inderscience Online Journals to access the Full Text of this article.

Pay per view:
If you are not a subscriber and you just want to read the full contents of this article, buy online access here.

Complimentary Subscribers, Editors or Members of the Editorial Board of the International Journal of Nano and Biomaterials (IJNBM):
Login with your Inderscience username and password:

Username:        Password:          Forgotten your password?

Want to subscribe?
A subscription gives you complete access to all articles in the current issue, as well as to all articles in the previous three years (where applicable). See our Orders page to subscribe.

If you still need assistance, please email subs@inderscience.com