Parallel non-linear dimension reduction algorithm on GPU
by Tsung Tai Yeh; Tseng Yi Chen; Yen Chiu Chen; Hsin Wen Wei
International Journal of Granular Computing, Rough Sets and Intelligent Systems (IJGCRSIS), Vol. 2, No. 2, 2011

Abstract: Advances in non-linear dimensionality reduction provide a way to understand and visualise the underlying structure of complex datasets. The performance of large-scale non-linear dimensionality reduction is of key importance in data mining, machine learning, and data analysis. In this paper, we concentrate on improving the performance of non-linear dimensionality reduction using large-scale datasets on the GPU. In particular, we focus on solving problems including k-nearest neighbour (KNN) search and sparse spectral decomposition for large-scale data, and propose an efficient framework for local linear embedding (LLE). We implement a k-d tree-based KNN algorithm and Krylov subspace method on the GPU to accelerate non-linear dimensionality reduction for large-scale data. Our results enable GPU-based k-d tree LLE processes of up to about 30-60× faster compared to the brute force KNN (Hernandez et al., 2007) LLE model on the CPU. Overall, our methods save O(n²-6n-2k-3) memory space.

Online publication date: Wed, 26-Oct-2011

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